研究方向：单细胞组学和空间多组学相关的实验和计算方法学开发及其数据挖掘

　　作为项目负责人主持3项国家自然科学基金课题，作为课题负责人承担国家重点研发和国防科技创新特区项目各1项，作为骨干参与国家重点专项和国家自然科学院基金重大研究计划各1项。

　　代表作 （*第一，#通讯）：

　　[1]Ji P*, Wang N*, Yu Y*, Zhao F#. Single-cell delineation of the microbiota-gut-brain axis: probiotic intervention in Chd8 haploinsufficient mice. Cell Genomics. 2025. 5(2):100768. (Article, Q1, IF: 11.1)

　　[2]Hu B*, He R*, Pang K*, Wang G*, Wang N, Zhu W, Sui X, Teng H, Liu T, Zhu J, Jiang Z, Zhang J, Zuo Z, Wang W, Ji P#, Zhao F#. High-resolution spatially resolved proteomics for complex tissues based on microfluidics and transfer learning. Cell, 2025. 188(3):734-748. (Article, Q1, 5-Year IF: 49.1)

　　[3]He R*, Zhu J*, Ji P#, Zhao F#. SEVtras delineates small extracellular vesicles at droplet resolution from single-cell transcriptomes. Nature Methods. 2024. 21, 259-266. (Article, Q1, 5-Year IF: 45.6)

　　[4]An N*, Yang F*, Zhang G, Jiang Y, Liu H, Gao Y, Li Y, Ji P#, Shang H#, Xing Y#. Single-cell RNA sequencing reveals the contribution of smooth muscle cells and endothelial cells to fibrosis in human atrial tissue with atrial fibrillation. Molecular Medicine. 2024. 30, 240. (Article, Q2, 5-Year IF: 6.0)

　　[5]Yu Y*, Zhang B*, Ji P*, Zuo Z, Huang Y. Wang N, Liu C, Liu S, Zhao F#. Changes to gut amino acid transporters and microbiome associated with increased E/I ratio in Chd8(+/-) mouse model of ASD-like behavior. Nature Communications. 2022. 13, 1151. (Article, Q1, 5-Year IF: 17.0)

　　[6]Wu W*, Ji P*, Zhao F#. CircAtlas: an integrated resource of one million highly accurate circular RNAs from 1070 vertebrate transcriptomes. Genome Biolology. 2020. 21, 101. (Article, Q1, 5-Year IF: 17.433)